{"id":312,"date":"2024-03-18T23:42:17","date_gmt":"2024-03-18T14:42:17","guid":{"rendered":"https:\/\/to-lab.net\/?page_id=312"},"modified":"2024-04-17T14:12:53","modified_gmt":"2024-04-17T05:12:53","slug":"publication","status":"publish","type":"page","link":"https:\/\/to-lab.net\/en\/publication\/","title":{"rendered":"Publication"},"content":{"rendered":"\n
\"\"<\/a><\/figure>\n\n\n\n
<\/span>\"\"
\n

<\/p>\n<\/div><\/div>\n\n\n\n

<\/div>
<\/div>
<\/div><\/div>\n\n\n\n

Publication<\/h2>\n\n\n\n
<\/div>
<\/div>
<\/div><\/div>\n\n\n\n

Kudo T, To TK, Kim JM. Simple and universal function of acetic acid to overcome the drought crisis. Stress Biol<\/strong><\/em>. 2023, 3(1),15.<\/p>\n\n\n\n

Bourguet P, Yelagandula R, To TK<\/strong>, Osakabe A, Alishe A, Lu RJH, Kakutani T, Chen P, Berger F. The histone variant H2A.W cooperates with chromatin modifications and linker histone H1 to maintain transcriptional silencing of transposons in Arabidopsis<\/em>. 2022, bioRXiv,<\/em><\/strong> bioRXiv<\/em> 2022.05.31.493688.<\/p>\n\n\n\n

Matsumura Y, To TK<\/strong>, Kunieda T, Kohno H, Kakutani T, Kubo T. Mblk-1\/E93, an ecdysone related-transcription factor, targets synaptic plasticity-related genes in the honey bee mushroom bodies. Scientific Reports<\/em><\/strong>. 2022, 12:21367.<\/p>\n\n\n\n

To TK<\/strong>, Kim JM. Plant Omics: Advances in Big Data Biology. Chapter 7, Plant Epigenomics, pp.<\/em>97-107. CABI, England.<\/em><\/strong><\/p>\n\n\n\n

\n

Crosstalk among pathways to generate DNA methylome. To TK<\/strong>\u00aa, Kakutani T*. Current Opinion in Plant Biology<\/em>,<\/strong> 2022, 68, 102248.<\/p>\n\n\n\n

<\/i><\/div><\/a><\/div><\/div>\n<\/div>\n\n\n\n
\n

To TK<\/strong>*\u00aa, Yamasaki C, Oda S, Tominaga S, Kobayashi A, Tarutani Y, Kakutani T*. Local and global crosstalk among heterochromatin marks drives DNA methylome patterning in Arabidopsis. Nature Communications<\/em><\/strong> 2022, 13: 861.<\/p>\n\n\n\n

<\/i><\/div><\/a><\/div><\/div>\n<\/div>\n\n\n\n

Vincent SA, Kim JM, P\u00e9rez-Salam\u00f3 I, To TK<\/strong>, Torii C, Ishida J, Tanaka M, Endo TA, Bhat P, Devlin PF, Seki M, Devoto A. Jasmonates and Histone deacetylase 6 activate Arabidopsis<\/em> genome-wide histone acetylation and methylation during the early acute stress response. 2022, BMC Biology<\/em><\/strong>, 20: 83.<\/p>\n\n\n\n

Yamaguchi N, Matsubara S, Yoshimizu K, Seki M, Hamada K, Kamitani M, Kurita Y, Nomura Y, Nagashima K, Inagaki S, Suzuki T, Gan ES, To T<\/strong>, Kakutani T, Nagano AJ, Satake A, Ito T. H3K27me3 demethylases alter HSP22 and HSP17.6C expression in response to recurring heat in Arabidopsis<\/em>. Nature Communications<\/em><\/strong>, 2021, 12: 3480.<\/p>\n\n\n\n

\n

To TK<\/strong>*\u00aa, Nishizawa Y\u00aa, Inagaki S\u00aa, Tarutani Y\u00aa, Tominaga S, Toyoda A, Fujiyama A, Berger F, Kakutani T*. RNA interference-independent reprogramming of DNA methylation in Arabidopsis. Nature Plants<\/em><\/strong>, 2020, 6: 1455\u20131467.<\/p>\n\n\n\n

<\/i><\/div><\/a><\/div><\/div>\n<\/div>\n\n\n\n

Yoshida T, Furihata HY, To TK<\/strong>, Kakutani T, Kawabe A. Genome defense against integrated organellar DNA fragments from plastids into plant nuclear genomes through DNA methylation. Scientific Reports<\/em><\/strong>, 2019, 9: 2060.<\/p>\n\n\n\n

(In Japanese) \u91d1 \u937e\u660e\u3001\u95a2 \u539f\u660e\u3001\u85e4 <\/u>\u6cf0\u5b50<\/strong>. \u9162\u9178\u3092\u4ecb\u3057\u305f\u690d\u7269\u306e\u4e7e\u71e5\u5fdc\u7b54\u3068\u30d7\u30e9\u30a4\u30df\u30f3\u30b0\u52b9\u679c \u9162\u9178\u3092\u4f7f\u3063\u3066\u4e7e\u71e5\u306b\u8010\u3048\u308b\u690d\u7269\u306e\u751f\u5b58\u6226\u7565. \u5316\u5b66\u3068\u751f\u7269<\/strong>, 2018, 56(2): 67-69.<\/p>\n\n\n\n

(In Japanese) \u91d1 \u937e\u660e, \u95a2 \u539f\u660e, \u85e4 <\/u>\u6cf0\u5b50<\/strong>\u300c\u9162\u9178\u3067\u690d\u7269\u306e\u4e7e\u71e5\u8010\u6027\u3092\u5f37\u5316\u3059\u308b\u300d\u30d0\u30a4\u30aa\u30b5\u30a4\u30a8\u30f3\u30b9\u3068\u30a4\u30f3\u30c0\u30b9\u30c8\u30ea\u30fc<\/strong>, 2018, 76: 49-51.<\/p>\n\n\n\n

(In Japanese) \u91d1 \u937e\u660e, \u95a2 \u539f\u660e, \u85e4 <\/u>\u6cf0\u5b50<\/strong>\u300c\u9162\u9178\u3092\u4f7f\u3063\u3066\u4e7e\u71e5\u30b9\u30c8\u30ec\u30b9\u306b\u6253\u3061\u52dd\u3064\u690d\u7269\u306e\u751f\u5b58\u6226\u7565\u300dAcademist J<\/em><\/strong>.<\/em> 2017, https:\/\/academist-cf.com\/journal\/?p=5448.<\/p>\n\n\n\n

\n

Kim JM\u00aa, To TK<\/u><\/strong>\u00aa, Matsui A, Tanoi K, Kobayashi NI, Matsuda F, Habu Y, Ogawa D, Sakamoto T, Matsunaga S, Bashir K, Rasheed S, Ando M, Takeda H, Kawaura K, Kusano M, Fukushima A, Endo TA, Kuromori T, Ishida J, Morosawa T, Tanaka M, Torii C, Takebayashi Y, Sakakibara H, Ogihara Y, Saito K, Shinozaki K, Devoto A, Seki M. Acetate-mediated novel survival strategy against drought in plants. Nature Plants<\/em><\/strong>, 2017, 3: 17097., 2020, 6: 1455\u20131467.<\/p>\n\n\n\n

<\/i><\/div><\/a><\/div><\/div>\n<\/div>\n\n\n\n
\n

To TK<\/strong>\u00aa, Saze H\u00aa, Kakutani T. DNA methylation within transcribed regions. Plant Physiology<\/em><\/strong>, 2015, 168: 1219-1225.<\/p>\n\n\n\n

<\/i><\/div><\/a><\/div><\/div>\n<\/div>\n\n\n\n
\n

Ito T\u00aa, Tarutani Y\u00aa, To TK<\/strong>\u00aa, Kassam M, Duvernois-Berthet E, Cortijo S, Takashima K, Saze H, Toyoda A, Fujiyama A, Colot V, Kakutani T. Genome-wide negative feedback drives transgenerational DNA methylation dynamics in Arabidopsis. PLoS Genetics<\/em><\/strong>, 2015, 11: e1005154.<\/p>\n\n\n\n

<\/i><\/div><\/a><\/div><\/div>\n<\/div>\n\n\n\n
\n

To TK<\/strong>*\u00aa, Kim JM. Epigenetic regulation of gene responsiveness in Arabidopsis<\/em>. Frontiers in Plant Science<\/em><\/strong>, 2014, 4: 548.<\/p>\n\n\n\n

<\/i><\/div><\/a><\/div><\/div>\n<\/div>\n\n\n\n

Kim JM, To TK<\/strong>, Tanaka M, Endo TA, Matsui A, Ishida J, Robertson FC, Toyoda T, Seki M. Highly reproducible ChIP-on-chip analysis to identify genome-wide protein binding and chromatin status in Arabidopsis thaliana<\/em>. Methods in Molecular Biology<\/em>, 3rd edition, Springer, 2014, 1062, 405-426.<\/p>\n\n\n\n

Jung JH, Park JH, Lee S, To TK<\/strong>, Kim JM, Seki M, Park CM. The cold signaling attenuator HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 activates FLOWERING LOCUS C transcription via chromatin remodeling under short-term cold stress in Arabidopsis<\/em>. Plant Cell<\/em><\/strong>, 2013, 11: 4378-4390.<\/p>\n\n\n\n

Kim JM, To TK<\/strong>, Seki M. An epigenetic integrator: new insights into genome regulation, environmental stress responses and developmental controls by histone deacetylase 6<\/em>. Plant Cell Physiol<\/em><\/strong>, 2012, 53: 794-800.<\/p>\n\n\n\n

Kim JM, To TK<\/strong>, Ishida J, Matsui A, Kimura H, Seki M. Transition of chromatin status during the process of recovery from drought stress in Arabidopsis thaliana<\/em>. Plant Cell Physiol<\/em><\/strong>, 2012, 53: 847-856.<\/p>\n\n\n\n

\n

To TK<\/strong>\u00aa, Kim JM\u00aa, Matsui A, Kurihara Y, Morosawa T, Ishida J, Tanaka M, Endo T, Kakutani T, Toyoda T, Kimura H, Yokoyama S, Shinozaki K, Seki M. Arabidopsis<\/em> HDA6 regulates locus-directed heterochromatin silencing in cooperation with MET1. PLoS Genetics<\/em><\/strong>, 2011, 4: e1002055.<\/p>\n\n\n\n

<\/i><\/div><\/a><\/div><\/div>\n<\/div>\n\n\n\n
\n

To TK<\/strong>\u00aa, Nakaminami K, Kim JM, Morosawa T, Ishida J, Tanaka M, Yokoyama S, Shinozaki K, Seki M. Arabidopsis<\/em> HDA6<\/em> is required for freezing tolerance. Biochem Biophys Res Commun<\/em><\/strong>, 2011, 406: 414-419.<\/p>\n\n\n\n

<\/i><\/div><\/a><\/div><\/div>\n<\/div>\n\n\n\n

Zhu Z, An F, Feng Y, Li P, Xue L, A M, Jiang Z, Kim JM, To TK<\/u><\/strong>, Li W, Zhang X, Yu Q, Dong Z, Chen WQ, Seki M, Zhou JM, Guo H. Derepression of ethylene-stabilized transcription factors (EIN3\/EIL1) mediates jasmonate and ethylene signaling synergy in Arabidopsis<\/em>. Proc Natl Acad Sci USA<\/em><\/strong>, 2011, 108: 12539-12544.<\/p>\n\n\n\n

Kim JM, To TK<\/strong>, Nishioka T, Seki M. Chromatin regulation functions in plant abiotic stress responses. Plant Cell Environment<\/em><\/strong>, 2010, 33: 604-611.<\/p>\n\n\n\n

Matsui A, Ishida J, Morosawa T, Okamoto M, Kim JM, Kurihara Y, Kawashima M, Tanaka M, To TK<\/strong>, Nakaminami K, Kaminuma E, Endo TA, Mochizuki Y, Kawaguchi S, Kobayashi N, Shinozaki K, Toyoda T, Seki M. Arabidopsis<\/em> tiling array analysis to identify the stress-responsive genes. Methods in Molecular Biology<\/em><\/strong>, 2010, 639: 141-155.<\/p>\n\n\n\n

Seki M, Okamoto M, Matsui A, Kim JM, Kurihara Y, Ishida J, Morosawa T, Kawashima M, To TK<\/u><\/strong>, Shinozaki K. Microarray analysis for studying plant abiotic stress responses. Molecular Techniques in Crop Improvement<\/em><\/strong>, 2nd edition. 2009, 333-355.<\/p>\n\n\n\n

Kim JM, To TK<\/strong>, Ishida J, Morosawa T, Kawashima M, Matsui A, Toyoda T, Kimura H, Shinozaki K, Seki M. Alterations of lysine modifications on histone H3 N-tail under drought stress conditions in Arabidopsis thaliana<\/em>. Plant Cell Physiol<\/em><\/strong>, 2008, 49:1580-1588.<\/p>\n\n\n\n

Seki M, Umezawa T, Kim JM, Matsui A, To TK<\/u><\/strong>, Shinozaki K. Transcriptome analysis of plant drought and salt stress response. Advances in Molecular Breeding toward Drought and Salt Tolerant Crops<\/em><\/strong>, 2007, 261-283.<\/p>\n\n\n\n

Mitsui T, Kitamura A, Kimoto M, To T<\/strong>, Sato A, Hirao I, Yokoyama S. An Unnatural Hydrophobic Base Pair with Shape Complementarity between Pyrrole-2-carbaldehyde and 9-Methylimidazo[(4,5)-b]pyridine. J. Am Chem Soc<\/em><\/strong>, 2003, 125: 5298-5307.<\/p>\n\n\n\n

Mitsui T, Kimoto M, Harada Y, Sato A, Kitamura A, To T<\/strong>, Hirao I, Yokoyama S. Enzymatic incorporation of an unnatural base pair between 4-propynyl-pyrrole-2-carbaldehyde and 9-methyl-imidazo [(4,5)-b]pyridine into nucleic acids. Nucleic Acids Res Suppl<\/em><\/strong>, 2002, 2: 219-220.<\/p>\n\n\n\n

Hirao I, Mitsui T, Fujiwara T, Kimoto M, To T<\/strong>, Okuni T, Sato A, Harada Y, Yokoyama S. Efforts toward creating unnatural base pairs for an expanded genetic code. Nucleic Acids Res Suppl<\/em><\/strong>, 2001, 1: 17-18.<\/p>\n\n\n\n

\u00aa First Author, *Corresponding Author<\/p>\n\n\n\n

<\/div>
<\/div>
<\/div><\/div>\n\n\n\n

TO Laboratory, Tokyo Institute of Tech<\/strong>nology<\/p>\n","protected":false},"excerpt":{"rendered":"

Publication Kudo T, To TK, Kim JM. Simple and universal function of acetic acid to overcome the drought crisis […]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_locale":"en_US","_original_post":"https:\/\/to-lab.net\/?page_id=37","vkexunit_cta_each_option":"","footnotes":""},"class_list":["post-312","page","type-page","status-publish","hentry","en-US"],"_links":{"self":[{"href":"https:\/\/to-lab.net\/wp-json\/wp\/v2\/pages\/312","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/to-lab.net\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/to-lab.net\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/to-lab.net\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/to-lab.net\/wp-json\/wp\/v2\/comments?post=312"}],"version-history":[{"count":13,"href":"https:\/\/to-lab.net\/wp-json\/wp\/v2\/pages\/312\/revisions"}],"predecessor-version":[{"id":567,"href":"https:\/\/to-lab.net\/wp-json\/wp\/v2\/pages\/312\/revisions\/567"}],"wp:attachment":[{"href":"https:\/\/to-lab.net\/wp-json\/wp\/v2\/media?parent=312"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}